The reporting does not paint a clear picture of what happened. Seems to imply they took off on the wrong runway, etc. But sounds like they took off on runway 21 which is the correct active runway. But they erroneously had runway 03 as the runway in the FMS. Now, if everything else in the FMS is correct (departure, initial waypoint, etc), their initial turn (left) should the correct turn to get them on course. The report does not say whether the FMS had anything else wrong other than the runway. Of course when they checked the route (assuming they did that), the FMS would have shown a right turn on course, which they may have expected (?). So, the only real problem that caused the reporting may have been the 200 ft when the turn began.
Anybody agree with this? And I agree...shockingly, they turned on the autopilot before 200ft (our opspec says 600 - still low). But sounds like, regardless, they would have turned at 200ft anyway because the flight director would have told them to.